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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. PGGT1B, protein geranylgeranyltransferase type I, beta subunit
Sequence ID:NM_005023
Entrez Gene ID:5229
Ensembl ID:ENSG00000164219

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5q22.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 114548098 - 114598548

NM_005023 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
21754114546527114548279
17551863114552561114552669
18642048114557520114557704
20492094114566672114566717
20952227114572086114572218
22282379114573554114573705
23802447114577235114577302
24482566114588833114588951
25672727114598408114598568

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40080750BC111924protein geranylgeranyltransferase type I, beta subunit
40080759BC118496protein geranylgeranyltransferase type I, beta subunit

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005014  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_005023 NP_005014 P53609 EC 2.5.1.59 Prenyltrans

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC111924 AAI11925 P53609 EC 2.5.1.59
BC118496 AAI18497    
AY780790 AAV98360 P53609 EC 2.5.1.59

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PGGT1B NP_005014 R.norvegicus Pggt1b 81746   NP_112344 98
M.musculus Pggt1b 225467 Gene Info NP_766215 97
A.gambiae AgaP_AGAP008406 1277573   XP_317045 52
D.melanogaster betaggt-I 33704   NP_525100 45
C.elegans Y48E1B.3 174999   NP_496848 44
A.thaliana PGGT-I 818540   NP_181487 42
N.crassa NCU02228 3875788   XP_959641 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)