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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. STOM, Stomatin
Sequence ID:NM_004099
NM_001270526
NM_198194
NM_001270527
Entrez Gene ID:2040
Ensembl ID:ENSG00000148175

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9q34.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 124103436 - 124132530

 Exon Info From UCSC:
NM_004099
NM_198194

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3873494Full LengthBC010703stomatin

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004090  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001270526 NP_001257455    
NM_001270527 NP_001257456    
NM_004099 NP_004090 P27105 Band_7
NM_198194 NP_937837    

Related Sequences

 
mRNAGenPeptSwissProt
M81635 AAA58432 P27105
BC010703 AAH10703 P27105
DQ891058 ABM81984  
DQ894236 ABM85162  
AK302977 BAG64120 B4DZK8
AK304449 BAG65267 B4E2V5
AK304518 BAG65322 B4E310
X60067 CAA42671 P27105
CR542100 CAG46897 P27105

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens STOM NP_004090 R.norvegicus Stom 296655   NP_001011965 89
M.musculus Stom 13830 Gene Info NP_038543 87
C.elegans sto-2 180802   NP_508902 70
D.melanogaster CG42540 38562   NP_729018 68
A.gambiae BND7A_ANOGA 1275086   XP_314315 67

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)