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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. VAMP2, vesicle-associated membrane protein 2 (synaptobrevin 2)
Sequence ID:NM_014232
Entrez Gene ID:6844
Ensembl ID:ENSG00000220205

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, stem cell, stomach, t-cell, testis, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17p13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 8064174 - 8065687

NM_014232 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
19174380624648064188
1744179580647908064841
1796195480649258065083
1955207580655668065686
2076217380661958066292

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3628842Full LengthBC002737vesicle-associated membrane protein 2 (synaptobrevin 2)
4508990Full LengthBC019608vesicle-associated membrane protein 2 (synaptobrevin 2)
5203115Full LengthBC033870vesicle-associated membrane protein 2 (synaptobrevin 2)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055047  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_014232 NP_055047 P63027 Synaptobrevin

Related Sequences

 
mRNAGenPeptSwissProt
BC002737 AAH02737 P63027
BC019608 AAH19608 P63027
BC033870 AAH33870 P63027
HQ448696 ADQ33174  
AK289555 BAF82244 P63027
AJ225044 CAA12385 P63027
AL050223 CAH10733 Q69Z01

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens VAMP2 NP_055047 M.musculus Vamp2 22318 Gene Info NP_033523 99
R.norvegicus Vamp2 24803   NP_036795 99
A.gambiae AgaP_AGAP007721 1269522   XP_001687848 74
D.melanogaster Syb 36080   NP_001137633 73

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta