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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. PSMA4, proteasome (prosome, macropain) subunit, alpha type, 4
Sequence ID:NM_001102667
NM_001102668
NM_002789
Entrez Gene ID:5685
Ensembl ID:ENSG00000041357

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15q25.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:15: 78832785 - 78841286

 Exon Info From UCSC:
NM_001102667
NM_001102668
NM_002789

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3685931Full LengthBC005361proteasome (prosome, macropain) subunit, alpha type, 4
4093514Full LengthBC056249proteasome (prosome, macropain) subunit, alpha type, 4
4287236Full LengthBC022445proteasome (prosome, macropain) subunit, alpha type, 4
6060404Full LengthBC047667proteasome (prosome, macropain) subunit, alpha type, 4
30414795Full LengthBC093069proteasome (prosome, macropain) subunit, alpha type, 4
3509102IncompleteBC001490proteasome (prosome, macropain) subunit, alpha type, 4
5421443IncompleteBC022817proteasome (prosome, macropain) subunit, alpha type, 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002780  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001102667 NP_001096137      
NM_001102668 NP_001096138      
NM_002789 NP_002780 P25789 EC 3.4.25.1 Proteasome

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC005361 AAH05361 P25789 EC 3.4.25.1
BC022445 AAH22445 P25789 EC 3.4.25.1
BC022817 AAH22817 P25789 EC 3.4.25.1
BC047667 AAH47667 P25789 EC 3.4.25.1
BC056249 AAH56249 Q7Z474  
BC093069 AAH93069 P25789 EC 3.4.25.1
BT009784 AAP88786 P25789 EC 3.4.25.1
DQ892539 ABM83465    
DQ895750 ABM86676    
D00763 BAA00660 P25789 EC 3.4.25.1
D28362 BAA05728    
AK315526 BAG37907 B2RDG0  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PSMA4 NP_001096137 M.musculus Psma4 26441 Gene Info NP_036096 99
R.norvegicus Psma4 29671   NP_058977 99
A.gambiae AgaP_AGAP004960 1275771   XP_315057 75
D.melanogaster Pros29 37378   NP_476691 71
C.elegans pas-3 172139   NP_491520 66
N.crassa NCU05942 3874933   XP_958786 63
A.thaliana PAC1 821774   NP_188850 60
S.cerevisiae PRE9 853036   NP_011651 55
P.falciparum PF13_0282 814246   XP_001350250 53
S.pombe SPAC13C5.01c 3361518   NP_001018184 53

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)