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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CLDN16, claudin 16
Sequence ID:NM_006580
RefSeqGene ID:NG_008149
Entrez Gene ID:10686
Ensembl ID:ENSG00000113946

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
HYPOMAGNESEMIA 3, RENAL 

Cytogenetic Location (from UniGene)

Cytogenetic Location:3q28Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 190105840 - 190127863

NM_006580 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1572190105660190106231
573675190120125190120227
676840190122550190122714
8411032190126102190126293
10333272190127691190129930

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
7262480Full LengthBC069682claudin 16
7262492Full LengthBC069759claudin 16
7262504Full LengthBC069777claudin 16
7262563Full LengthBC069662claudin 16

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006571  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006580 NP_006571 Q9Y5I7 PMP22_Claudin

Related Sequences

 
mRNAGenPeptSwissProt
AF152101 AAD43096 Q9Y5I7
BC069662 AAH69662 Q9Y5I7
BC069682 AAH69682 Q9Y5I7
BC069759 AAH69759 Q9Y5I7
BC069777 AAH69777 Q9Y5I7
DQ305102 ABC47832 A0SDD8
HQ448426 ADQ32906  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CLDN16 NP_006571 M.musculus Cldn16 114141 Gene Info NP_444471 92
R.norvegicus Cldn16 155268   NP_571980 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)