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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PRG3, proteoglycan 3
Sequence ID:NM_006093
Entrez Gene ID:10394
Ensembl ID:ENSG00000156575

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11q12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 57144242 - 57148623

NM_006093 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
191575714424257144380
1582695714519757145308
2704015714615357146284
4027155714696657147279
7168495714812057148253
8508865714858657148622

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
7216981Full LengthBC069126proteoglycan 3
8069119Full LengthBC101613proteoglycan 3
8322463Full LengthBC113411proteoglycan 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006084  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006093 NP_006084 Q9Y2Y8 Lectin_C

Related Sequences

 
mRNAGenPeptSwissProt
AF132209 AAD24471 Q9Y2Y8
BC069126 AAH69126 Q9Y2Y8
BC101613 AAI01614 Q9Y2Y8
BC113411 AAI13412 Q9Y2Y8
AY358930 AAQ89289 Q9Y2Y8
HQ258112 ADR82866  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PRG3 NP_006084 M.musculus Prg3 53856 Gene Info NP_058610 63
R.norvegicus Prg3 295706   NP_001099957 61

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)