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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TRPC1, transient receptor potential cation channel, subfamily C, member 1
Sequence ID:NM_001251845
NM_003304
RefSeqGene ID:NG_030369
Entrez Gene ID:7220
Ensembl ID:ENSG00000144935

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3q23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 142443401 - 142525077


Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40067810Full LengthBC112338transient receptor potential cation channel, subfamily C, member 1
40067811Full LengthBC113953transient receptor potential cation channel, subfamily C, member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003295  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001251845 NP_001238774 P48995  
NM_003304 NP_003295   Ion_trans
TRP_2

Related Sequences

 
mRNAGenPeptSwissProt
BC112338 AAI12339 P48995
BC113953 AAI13954 P48995
EF522961 ABP94017 A5A3A6
GQ293239 ACT66710 C7EWL4
AB255425 BAF76425 A7VJS2
X89066 CAA61447 P48995

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TRPC1 NP_003295 M.musculus Trpc1 22063 Gene Info NP_035773 100
R.norvegicus Trpc1 89821   NP_446010 99

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)