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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SCN10A, sodium channel, voltage-gated, type X, alpha subunit
Sequence ID:NM_006514
RefSeqGene ID:NG_031891
Entrez Gene ID:6336
Ensembl ID:ENSG00000185313

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3p22.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 38738836 - 38835501

 Exon Info From UCSC:
NM_006514

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100068834BC172222sodium channel, voltage-gated, type X, alpha subunit

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006505  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006514 NP_006505 Q9Y5Y9 Ion_trans
Na_trans_assoc

Related Sequences

 
mRNAGenPeptSwissProt
AF117907 AAD30863 Q9Y5Y9
BC172222 AAI72222 Q9Y5Y9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SCN10A NP_006505 R.norvegicus Scn10a 29571   NP_058943 83
M.musculus Scn10a 20264 Gene Info NP_033160 82

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)