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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SUPT6H, suppressor of Ty 6 homolog (S. cerevisiae)
Sequence ID:NM_003170
Entrez Gene ID:6830
Ensembl ID:ENSG00000109111

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 27024975 - 27029249

 Exon Info From UCSC:
NM_003170

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9007230Full LengthBC150268suppressor of Ty 6 homolog (S. cerevisiae)
9020512Full LengthBC136522suppressor of Ty 6 homolog (S. cerevisiae)
9020514Full LengthBC136524suppressor of Ty 6 homolog (S. cerevisiae)
3454122IncompleteBC003692suppressor of Ty 6 homolog (S. cerevisiae)
3456230IncompleteBC003696suppressor of Ty 6 homolog (S. cerevisiae)
3533805IncompleteBC017105suppressor of Ty 6 homolog (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003161  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003170 NP_003161 Q7KZ85 S1

Related Sequences

 
mRNAGenPeptSwissProt
U38658 AAB18949 Q7KZ85
AF070532 AAC28631 Q7KZ85
U38623 AAC99996 Q7KZ85
BC003692 AAH03692 Q7KZ85
BC003696 AAH03696 Q7KZ85
BC017105 AAH17105 Q7KZ85
BC033074 AAH33074 Q7KZ85
BC073963 AAH73963 Q7KZ85
BC136522 AAI36523 Q7KZ85
BC136524 AAI36525 Q7KZ85
BC150268 AAI50269 Q7KZ85
D79984 BAA11479 Q7KZ85

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SUPT6H NP_003161 M.musculus Supt6h 20926 Gene Info NP_033323 98
R.norvegicus Supt6h 303281   XP_239258 98
A.gambiae AgaP_AGAP003619 1274282   XP_313379 53
D.melanogaster Spt6 44000   NP_651962 51
C.elegans emb-5 175621   NP_497969 40
A.thaliana GTB1 842855   NP_176723 33
S.pombe spt6 2541605   NP_594487 33
A.thaliana AT1G63210 842626   NP_176510 32
N.crassa NCU04611 3875001   XP_958854 32
S.cerevisiae SPT6 853011   NP_011631 29

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)