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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CCDC130, coiled-coil domain containing 130
Sequence ID:NM_030818
Entrez Gene ID:81576
Ensembl ID:ENSG00000104957

Database Links

UniGeneEntrez GeneEnsembl GeneVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:19p13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 13858748 - 13874103

NM_030818 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1161385875213858767
172201386242113862624
2212741386510213865155
2753571386701013867092
3584131386823113868286
4144741386859913868659
4756171386968113869823
6187901386991313870085
7919291387311213873250
93016321387340313874105

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3940130Full LengthBC002905coiled-coil domain containing 130

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_110445  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_030818 NP_110445 P13994 DUF572

Related Sequences

 
mRNAGenPeptSwissProt
BC002905 AAH02905 P13994
AF250306 AAK37425 P13994
HQ447309 ADQ31796  
AK098262 BAG53603 B3KUZ1
AK293927 BAH11628 B7Z1U2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CCDC130 NP_110445 M.musculus Ccdc130 67736 Gene Info NP_080626 81
R.norvegicus Ccdc130 304656   NP_001032733 81
D.melanogaster CG15084 37178   NP_611383 54
A.gambiae AgaP_AGAP007890 3291610   XP_555619 52
A.thaliana AT1G25682 839146   NP_173930 47
C.elegans ZK1307.9 174518   NP_496077 46
S.pombe cwc16 2540801   NP_595734 39
N.crassa NCU05961 3874729   XP_958575 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)