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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. POU5F1, POU class 5 homeobox 1
Sequence ID:NM_203289
NM_002701
NM_001173531
Entrez Gene ID:5460
Ensembl ID:ENSG00000204531

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6p21.31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 30771966 - 31138441

 Exon Info From UCSC:
NM_203289
NM_002701
NM_001173531

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40125986Full LengthBC117435POU class 5 homeobox 1
40125988Full LengthBC117437POU class 5 homeobox 1
4717277IncompleteBC020712POU domain, class 5, transcription factor 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_976034  NP_002692  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001173531 NP_001167002    
NM_002701 NP_002692 Q01860 Homeobox
Pou
NM_203289 NP_976034   Homeobox
Pou

Related Sequences

 
mRNAGenPeptSwissProt
S81255 AAB35990 Q01860
BC117435 AAI17436 Q01860
BC117437 AAI17438 Q01860
EU518650 ACD14148 C3RUE0
GU480808 ADE48539 D2IYK3
GU480809 ADE48540 D5K9Q3
GU480811 ADE48541 D2IYK3
GU480812 ADE48542 D2IYK3
GU480813 ADE48543 D5K9Q6
GU480815 ADE48544 D5K9Q7
GU480816 ADE48545 D2IYK3
GU480817 ADE48546 D5K9Q9
GU480818 ADE48547 D2IYK3
GU480819 ADE48548 D5K9R1
GU480820 ADE48549 D5K9R2
GU480821 ADE48550 D5K9R3
GU480822 ADE48551 D5K9R4
GU480823 ADE48552 D5K9R5
GU480824 ADE48553 D2IYK3
GU480825 ADE48554 D5K9R7
GU480826 ADE48555 D5K9R8
GU480827 ADE48556 D5K9R9
GU480828 ADE48557 D2IYK3
GU480829 ADE48558 D5K9S1
GU480830 ADE48559 D2IYK3
HQ258221 ADR82975  
HQ258573 ADR83327  
HQ122658 ADW77313 E9LR73
HQ122660 ADW77314 D2IYK3
HQ122661 ADW77315 E9LR75
HQ122662 ADW77316 D2IYK3
HQ122663 ADW77317 E9LR77
HQ122664 ADW77318 D2IYK3
HQ122665 ADW77319 E9LR79
HQ122667 ADW77320 D2IYK3
HQ122668 ADW77321 D2IYK3
HQ122669 ADW77322 D2IYK3
HQ122670 ADW77323 D2IYK3
HQ122672 ADW77324 D2IYK3
HQ122673 ADW77325 D2IYK3
HQ122674 ADW77326 D2IYK3
HQ122675 ADW77327 D2IYK3
Z11898 CAA77951 Q01860
Z11899 CAA77952 Q01860
AM851115 CAO99189 A7WPL9
AM851116 CAO99190 A7WPM0
AM851117 CAO99191 A7WPM1
AM851118 CAO99192 A7WPM2
AM851119 CAO99193 A7WPM3
AM851120 CAO99194 A7WPM4
AM851121 CAO99195 A7WPM5
AM851122 CAO99196 A7WPM6
AM851123 CAO99197 A7WPM7
AM851124 CAO99198 A7WPM8
AM851125 CAO99199 A7WPM9
AM851126 CAO99200 A7WPN0
FM177951 CAQ76268 B5B8N7
FM177952 CAQ76269 B5B8N8
FM177953 CAQ76270 B5B8N9
FM177954 CAQ76271 B5B8P0
FM177955 CAQ76272 B5B8P1
FM177956 CAQ76273 B5B8P2
FM177957 CAQ76274 B5B8P3
FM177958 CAQ76275 B5B8P4
FM177959 CAQ76276 B5B8P5
FM177960 CAQ76277 B5B8P6
FM177961 CAQ76278 B5B8P7
FM177962 CAQ76279 B5B8P8
FM177963 CAQ76280 B5B8P9
FM177964 CAQ76281 B5B8Q0
FM177965 CAQ76282 B5B8Q1
FM177968 CAQ76285 B5B8Q4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens POU5F1 NP_002692 M.musculus Pou5f1 18999 Gene Info NP_038661 86
R.norvegicus Pou5f1 294562   NP_001009178 86

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)