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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PSPN, persephin
Sequence ID:NM_004158
Entrez Gene ID:5623
Ensembl ID:ENSG00000125650

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:19p13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 6375304 - 6375860

NM_004158 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
232363753056375626
32447163757126375859

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100062016Full LengthBC156563persephin
100015948BC152717persephin

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004149  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004158 NP_004149 O60542 TGF_beta

Related Sequences

 
mRNAGenPeptSwissProt
AF040962 AAC39640 O60542
BC152717 AAI52718  
BC156563 AAI56564  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PSPN NP_004149 R.norvegicus Pspn 25525   NP_037146 69
M.musculus Pspn 19197 Gene Info NP_032980 66

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)