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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CAPN5, calpain 5
Sequence ID:NM_004055
RefSeqGene ID:NG_033002
Entrez Gene ID:726
Ensembl ID:ENSG00000149260

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11q14Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 76778062 - 76835174

 Exon Info From UCSC:
NM_004055

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3904914Full LengthBC018123calpain 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004046  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004055 NP_004046 O15484 C2
Peptidase_C2
Calpain_III

Related Sequences

 
mRNAGenPeptSwissProt
U94346 AAC51869 O15484
BC018123 AAH18123 O15484
DQ891602 ABM82528  
EU176587 ABW03388  
AK129588 BAC85188 Q6ZPC4
AK128124 BAC87282 Q6ZRM8
AB209087 BAD92324 Q59GM2
AK094150 BAG52829 B3KSR7
Y10552 CAA71584 O15484

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CAPN5 NP_004046 M.musculus Capn5 12337 Gene Info NP_031628 92
R.norvegicus Capn5 171495   NP_604456 91
C.elegans tra-3 178385   NP_502751 42

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)