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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. MCHR1, melanin-concentrating hormone receptor 1
Sequence ID:NM_005297
RefSeqGene ID:NG_029686
Entrez Gene ID:2847
Ensembl ID:ENSG00000128285

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:22q13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:22: 41075443 - 41077932

NM_005297 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
15574107518141075737
55824224107695241078816

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3503484Full LengthBC001736melanin-concentrating hormone receptor 1
4890530Full LengthBC021146melanin-concentrating hormone receptor 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005288  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005297 NP_005288   7tm_1

Related Sequences

 
mRNAGenPeptSwissProt
BC001736 AAH01736 Q99705
BC021146 AAH21146 Q99705
AF490537 AAO14670 Q99705
BT006725 AAP35371 Q99705
AY562945 AAS72373 Q99705
AY745811 AAV98052 Q5IFI4
AY747629 AAV98053 Q5IFH6
DQ893603 ABM84529  
DQ895065 ABM85991  
AB063174 BAB60890 Q99705
AK314857 BAG37373 Q99705
CR456497 CAG30383 Q99705
CU013094 CAK54525  
CU013382 CAK54824  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens MCHR1 NP_005288 R.norvegicus Mchr1 83567   NP_113946 96
M.musculus Mchr1 207911 Gene Info NP_660114 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)