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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HTR1A, 5-hydroxytryptamine (serotonin) receptor 1A, G protein-coupled
Sequence ID:NM_000524
RefSeqGene ID:NG_032816
Entrez Gene ID:3350
Ensembl ID:ENSG00000178394

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
PERIODIC FEVER, MENSTRUAL CYCLE DEPENDENT 

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q11.2-q13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 63256277 - 63257546

NM_000524 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
212696325627863257545

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
7217020Full LengthBC0691595-hydroxytryptamine (serotonin) receptor 1A
9020250Full LengthBC1362635-hydroxytryptamine (serotonin) receptor 1A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000515  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000524 NP_000515 Q5ZGX3
P08908
7tm_1

Related Sequences

 
mRNAGenPeptSwissProt
S64045 AAD13945 A0N5V3
BC069159 AAH69159 Q5ZGX3
P08908
BC136263 AAI36264 Q5ZGX3
AF498978 AAM21125 Q5ZGX3
P08908
AK291429 BAF84118 A8K5W4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HTR1A NP_000515 R.norvegicus Htr1a 24473   NP_036717 90
M.musculus Htr1a 15550 Gene Info NP_032334 88
A.gambiae GPRTYR 1273444   XP_312420 48
D.melanogaster TyrR 42452   NP_001163494 44
C.elegans ser-2 182110   NP_001024339 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)