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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. OPN1MW, opsin 1 (cone pigments), medium-wave-sensitive
Sequence ID:NM_000513
RefSeqGene ID:NG_011606
Entrez Gene ID:2652
Ensembl ID:ENSG00000147380

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
BLUE CONE MONOCHROMACYOPN1LW
COLORBLINDNESS, DEUTAN 

Cytogenetic Location (from UniGene)

Cytogenetic Location:Xq28Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 153448084 - 153461596

NM_000513 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1194153448084153448277
195491153453258153453554
492660153455542153455710
661826153457178153457343
8271066153458898153459137
10671997153461420153462350

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9052304Full LengthBC143790opsin 1 (cone pigments), medium-wave-sensitive
9053255Full LengthBC171754opsin 1 (cone pigments), medium-wave-sensitive
9053256Full LengthBC171755opsin 1 (cone pigments), medium-wave-sensitive
9056750Full LengthBC140938opsin 1 (cone pigments), medium-wave-sensitive
100062230Full LengthBC156776opsin 1 (cone pigments), medium-wave-sensitive

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000504  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000513 NP_000504 P04001 7tm_1

Related Sequences

 
mRNAGenPeptSwissProt
BC140938 AAI40939 B2RU31
BC143790 AAI43791 B7ZLG5
BC156776 AAI56777  
BC171754 AAI71754 B7ZLG5
BC171755 AAI71755 B7ZLG5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens OPN1MW NP_000504 H.sapiens OPN1MW2 728458 Gene Info NP_001041646 100

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)