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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RHO, rhodopsin
Sequence ID:NM_000539
RefSeqGene ID:NG_009115
Entrez Gene ID:6010
Ensembl ID:ENSG00000163914

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
NIGHT BLINDNESS, CONGENITAL STATIONERY, AUTOSOMAL DOMINANT 1 
RETINITIS PIGMENTOSA 4, AUTOSOMAL DOMINANT OR RECESSIVE 
RETINITIS PUNCTATA ALBESCENSPRPH2
RDH5
RLBP1

Cytogenetic Location (from UniGene)

Cytogenetic Location:3q21-q24Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 129247489 - 129252640

NM_000539 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1456129247481129247936
457625129249718129249886
626791129251093129251258
7921031129251375129251614
10322767129252450129254185

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8327572Full LengthBC112104rhodopsin
8327574Full LengthBC112106rhodopsin
40080645BC111451rhodopsin

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000530  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000539 NP_000530 P08100 7tm_1

Related Sequences

 
mRNAGenPeptSwissProt
BC111451 AAI11452  
BC112104 AAI12105 P08100
BC112106 AAI12107 P08100
BX537381 CAD97623 P08100
AM392780 CAL37658  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RHO NP_000530 M.musculus Rho 212541 Gene Info NP_663358 95
R.norvegicus Rho 24717   NP_254276 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta