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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RBCK1, RanBP-type and C3HC4-type zinc finger containing 1
Sequence ID:NM_006462
NM_031229
NM_031227
NM_031228
Entrez Gene ID:10616
Ensembl ID:ENSG00000125826

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, brain, cartilage, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:20p13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 389362 - 411610

 Exon Info From UCSC:
NM_006462
NM_031229

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3877587Full LengthBC015219RanBP-type and C3HC4-type zinc finger containing 1
3450450IncompleteBC000983RanBP-type and C3HC4-type zinc finger containing 1
3639991IncompleteBC016301chromosome 20 open reading frame 18

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006453  NP_112506  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006462 NP_006453   zf-C3HC4
zf-RanBP
NM_031229 NP_112506 Q9BYM8 zf-C3HC4
zf-RanBP

Related Sequences

 
mRNAGenPeptSwissProt
U67322 AAD00162 Q9BYM8
BC015219 AAH15219 Q9BYM8
AB107766 BAC75409 Q9BYM8
AK297524 BAG59927 B4DML5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RBCK1 NP_112506 M.musculus Rbck1 24105 Gene Info NP_001077390 92
R.norvegicus Rbck1 60383   NP_068532 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)