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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. ATP5J, ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6
Sequence ID:NM_001003703
NM_001003701
NM_001685
NM_001003696
NM_001003697
Entrez Gene ID:522
Ensembl ID:ENSG00000154723

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:21q21.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:21: 27096950 - 27107213

 Exon Info From UCSC:
NM_001003703
NM_001003701
NM_001685
NM_001003696
NM_001003697

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3357779Full LengthBC001178ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F6
4795914Full LengthBC066310ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001003701  NP_001003703  NP_001003697  NP_001003696  NP_001676  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001003696 NP_001003696 Q6IB54
P18859
ATP-synt_F6
NM_001003697 NP_001003697 Q6IB54
P18859
ATP-synt_F6
NM_001003701 NP_001003701   ATP-synt_F6
NM_001003703 NP_001003703 Q6IB54
P18859
ATP-synt_F6
NM_001685 NP_001676 Q6IB54
P18859
ATP-synt_F6

Related Sequences

 
mRNAGenPeptSwissProt
M37104 AAA51807 Q6IB54
P18859
M73031 AAA58630 P18859
BC001178 AAH01178 Q6IB54
P18859
BC066310 AAH66310 Q6NZ59
BT007244 AAP35908 Q6IB54
P18859
AY544129 AAT11160 Q6IB54
AK311899 BAG34840 Q6IB54
AL110183 CAB53667 Q6IB54
P18859
CR456950 CAG33231 Q6IB54
P18859

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ATP5J NP_001003701 M.musculus Atp5j 11957 Gene Info NP_058035 81
R.norvegicus Atp5j 94271   NP_446054 77

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)