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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SNRNP200, small nuclear ribonucleoprotein 200kDa (U5)
Sequence ID:NM_014014
RefSeqGene ID:NG_016973
Entrez Gene ID:23020
Ensembl ID:ENSG00000144028

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2q11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 96940076 - 96968947

 Exon Info From UCSC:
NM_014014

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3139787IncompleteBC007577small nuclear ribonucleoprotein 200kDa (U5)
3140321IncompleteBC001417small nuclear ribonucleoprotein 200kDa (U5)
6042731IncompleteBC112891small nuclear ribonucleoprotein 200kDa (U5)
6048229IncompleteBC065924small nuclear ribonucleoprotein 200kDa (U5)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_054733  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_014014 NP_054733 O75643 EC 3.6.4.13 DEAD
Helicase_C
Sec63

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF085356 AAD40191 Q9UNV9  
AF119874 AAF69628 Q9P172  
BC001417 AAH01417 Q7L5W4  
BC007577 AAH07577 O75643 EC 3.6.4.13
BC065924 AAH65924 O75643 EC 3.6.4.13
BC112891 AAI12892 A4FU77  
BC131784 AAI31785 A2RRQ7  
AY572488 AAS78571 O75643 EC 3.6.4.13
AB018331 BAA34508 O75643 EC 3.6.4.13
AK023840 BAB14698 Q9H8B9  
AK024391 BAB14906 O75643 EC 3.6.4.13
AK090671 BAC03499 O75643 EC 3.6.4.13
AK303465 BAG64507 B4E0P5  
AK303663 BAG64662 B4E150  
AJ844618 CAH59741 Q5ZF01  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SNRNP200 NP_054733 M.musculus Snrnp200 320632 Gene Info NP_796188 100
R.norvegicus Ascc3l1 296126   NP_001032855 100
A.gambiae AgaP_AGAP001519 1281659   XP_321605 75
D.melanogaster CG5931 39737   NP_648818 75
C.elegans Y46G5A.4 174901   NP_496710 62
A.thaliana emb1507 838690   NP_001185050 59
A.thaliana AT2G42270 818828   NP_181756 57
N.crassa NCU02685 3881624   XP_965458 53
S.pombe brr2 2543676   NP_593346 50
S.cerevisiae BRR2 856919   NP_011099 42

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)