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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TRAPPC1, Trafficking protein particle complex 1
Sequence ID:NM_021210
NM_001166621
RefSeqGene ID:NG_029754
Entrez Gene ID:58485
Ensembl ID:ENSG00000170043

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17p13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 7833923 - 7835260

 Exon Info From UCSC:
NM_021210
NM_001166621

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5518603Full LengthBC032717trafficking protein particle complex 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_067033  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001166621 NP_001160093    
NM_021210 NP_067033 Q9Y5R8 Sybindin

Related Sequences

 
mRNAGenPeptSwissProt
BC032717 AAH32717 Q9Y5R8
DQ890860 ABM81786  
DQ894015 ABM84941  
AK314038 BAG36747 B2RA50

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TRAPPC1 NP_001160093 M.musculus Trappc1 245828 Gene Info NP_001019377 99
R.norvegicus Trappc1 287427   NP_001034467 99
D.melanogaster Bet5 43590   NP_651778 55
A.gambiae AgaP_AGAP000995 1270490   XP_309190 51
A.thaliana AT1G51160 841539   NP_175528 49
N.crassa NCU06176 3879136   XP_962988 45
S.pombe bet5 2543335   NP_594073 37

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)