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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. VAMP7, vesicle-associated membrane protein 7
Sequence ID:NM_001145149
NM_001185183
NM_005638
NR_033714
NR_033715
RefSeqGene ID:NG_021435
Entrez Gene ID:6845
Ensembl ID:ENSG00000124333

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:Xq28 and Yq12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 155111037 - 155173415

 Exon Info From UCSC:
NM_001145149
NM_001185183
NM_005638

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6503665Full LengthBC056141vesicle-associated membrane protein 7

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005629  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001145149 NP_001138621    
NM_001185183 NP_001172112    
NM_005638 NP_005629 P51809 Synaptobrevin

Related Sequences

 
mRNAGenPeptSwissProt
BC056141 AAH56141 P51809
AK222794 BAD96514 P51809
AK312658 BAG35541 B2R6P4
AK293525 BAG57007 B4DE96
AK295605 BAG58491 B4DIH9
AK297385 BAG59826 B4DMB4
X92396 CAA63133 P51809
AJ295938 CAC16891 P51809
AJ549301 CAD70593 P51809
AM393132 CAL38010  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens VAMP7 NP_005629 M.musculus Vamp7 20955 Gene Info NP_035645 97
R.norvegicus Vamp7 85491   NP_445983 95
A.gambiae AgaP_AGAP000700 1272287   XP_311230 52
D.melanogaster CG1599 36015   NP_610524 52
A.thaliana VAMP714 832297   NP_197628 42
N.crassa NCU06370 3878552   XP_962404 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)