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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CLCA2, Chloride channel accessory 2
Sequence ID:NM_006536
Entrez Gene ID:9635
Ensembl ID:ENSG00000137975

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1p22.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 86889891 - 86921940

 Exon Info From UCSC:
NM_006536

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5752653Full LengthBC041096chloride channel accessory 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006527  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006536 NP_006527 Q9UQC9 CLCA_N

Related Sequences

 
mRNAGenPeptSwissProt
AF043977 AAD40367 Q9UQC9
AF127980 AAD48397 Q9UQC9
BC041096 AAH41096 Q9UQC9
AB026833 BAA77810 Q9UQC9
AK290348 BAF83037 Q9UQC9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CLCA2 NP_006527 R.norvegicus Clca5 308016   NP_001100920 74
M.musculus Clca5 229933 Gene Info NP_848812 72

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)