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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. GIN1, Gypsy retrotransposon integrase 1
Sequence ID:NM_017676
Entrez Gene ID:54826
Ensembl ID:ENSG00000145723

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5q21.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 102423519 - 102455840

NM_017676 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12173102421703102423875
21742459102432244102432529
24602636102433017102433193
26372828102433293102433484
28293134102440244102440549
31353328102442419102442612
33293474102444272102444417
34753549102455767102455841

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9057035Full LengthBC151135gypsy retrotransposon integrase 1
9057054Full LengthBC157835gypsy retrotransposon integrase 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060146  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_017676 NP_060146 Q9NXP7 rve

Related Sequences

 
mRNAGenPeptSwissProt
BC015325 AAH15325 Q9NXP7
BC151135 AAI51136 Q9NXP7
BC157835 AAI57836 Q9NXP7
JF432633 ADZ15850  
AK000132 BAA90963 Q9NXP7
AK295796 BAG58616 Q9NXP7
CR627424 CAH10511 Q9NXP7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens GIN1 NP_060146 M.musculus Gin1 252876 Gene Info NP_080526 86
R.norvegicus Gin1 316687   NP_001020183 84

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)