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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. C1GALT1, core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1
Sequence ID:NM_020156
RefSeqGene ID:NG_027732
Entrez Gene ID:56913
Ensembl ID:ENSG00000106392

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:7p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 7273888 - 7283981

NM_020156 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
120672222457222450
20744372739337274169
444111172778857278552
1112193672831547283978

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2957836IncompleteBC003174core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_020156 NP_064541 Q9NS00 EC 2.4.1.122  

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF155582 AAF81981 Q9NS00 EC 2.4.1.122
BC003174 AAH03174 Q9NS00 EC 2.4.1.122
AJ132443 CAC45046 Q9NS00 EC 2.4.1.122
AJ243256 CAC80435 Q9NS00 EC 2.4.1.122
AJ278960 CAC82373 Q9NS00 EC 2.4.1.122

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens C1GALT1 NP_064541 R.norvegicus C1galt1 65044   NP_075239 90
M.musculus C1galt1 94192 Gene Info NP_443719 89
C.elegans C38H2.2 176455   NP_499293 54
A.gambiae AgaP_AGAP009979 1279400   XP_319116 53
D.melanogaster C1GalTA 34215   NP_609258 52

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)