Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. VPS18, vacuolar protein sorting 18 homolog (S. cerevisiae)
Sequence ID:NM_020857
Entrez Gene ID:57617
Ensembl ID:ENSG00000104142

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:15q14-q15Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:15: 41186652 - 41196172

NM_020857 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
14304118662741187056
4315724118813541188276
5736644119110441191195
66525354119134141193211
253638944119481341196171

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2822780Full LengthBC001513vacuolar protein sorting 18 homolog (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_065908  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_020857 NP_065908 Q9P253 Pep3_Vps18

Related Sequences

 
mRNAGenPeptSwissProt
AF308802 AAG34679 Q9P253
BC001513 AAH01513 Q9P253
DQ892752 ABM83678  
DQ895998 ABM86974  
AB040908 BAA95999 Q9P253
AL713725 CAD28515 Q9P253

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens VPS18 NP_065908 M.musculus Vps18 228545 Gene Info NP_758473 96
R.norvegicus Vps18 296083   NP_001099969 95
A.gambiae AgaP_AGAP000983 1270480   XP_560205 37
A.thaliana AT1G12470 837804   NP_172709 37
D.melanogaster dor 31118   NP_477286 37
N.crassa NCU06183 3879143   XP_962995 36
S.pombe pep3 2539053   NP_588498 29

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)