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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. APOA2, Apolipoprotein A-II
Sequence ID:NM_001643
RefSeqGene ID:NG_012043
Entrez Gene ID:336
Ensembl ID:ENSG00000158874

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
CORONARY ARTERY DISEASE IN FAMILIAL HYPERCHOLESTEROLEMIA, PROTECTION AGAINSTABCA1
EPHX2
GHR
GHR
GHR
ITIH4
LDLR
LDLR
PPP1R17

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q23.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 161192108 - 161193198

NM_001643 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1230161192082161192311
231363161192707161192839
364439161193139161193214
440473161193384161193417

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3934476Full LengthBC005282apolipoprotein A-II

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001634  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001643 NP_001634 P02652 ApoA-II

Related Sequences

 
mRNAGenPeptSwissProt
M29882 AAA51701 P02652
BC005282 AAH05282 P02652
BT006786 AAP35432 P02652
DQ892493 ABM83419  
DQ895705 ABM86631  
AB106565 BAD05173 Q76EI7
AK312034 BAG34971 P02652
X00955 CAA25467 P02652

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens APOA2 NP_001634 M.musculus Apoa2 11807 Gene Info NP_038502 64
R.norvegicus Apoa2 25649   NP_037244 57

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta