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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC35A5, solute carrier family 35, member A5
Sequence ID:NM_017945
Entrez Gene ID:55032
Ensembl ID:ENSG00000138459

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3q13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 112302369 - 112304424

NM_017945 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1226112280894112281119
227375112282231112282379
376474112288017112288115
475605112289386112289516
606673112292735112292802
6741454112299392112300172
14552939112301517112303001

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3450563Full LengthBC010307solute carrier family 35, member A5
3829330Full LengthBC005207solute carrier family 35, member A5
3875085Full LengthBC013046solute carrier family 35, member A5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060415  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_017945 NP_060415 Q9BS91 Nuc_sug_transp

Related Sequences

 
mRNAGenPeptSwissProt
BC005207 AAH05207 Q9BS91
BC010307 AAH10307 Q9BS91
BC013046 AAH13046 Q9BS91
AY358994 AAQ89353 Q9BS91
HQ448246 ADQ32726  
AK000737 BAA91350 Q9BS91
AK172825 BAD18792 Q9BS91
AK297411 BAG59846 B4DMD4
AL117531 CAH10717 Q9BS91

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC35A5 NP_060415 M.musculus Slc35a5 74102 Gene Info NP_083032 86
R.norvegicus Slc35a5 498081   XP_573283 85

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)