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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LIN28B, lin-28 homolog B (C. elegans)
Sequence ID:NM_001004317
RefSeqGene ID:NG_032815
Entrez Gene ID:389421
Ensembl ID:ENSG00000187772

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 105404922 - 105528821

NM_001004317 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1213105404922105405134
214401105405973105406160
402586105474172105474356
5875504105526288105531205

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9021526Full LengthBC137526lin-28 homolog B (C. elegans)
9021527Full LengthBC137527lin-28 homolog B (C. elegans)
40127308IncompleteBC127712lin-28 homolog B (C. elegans)
40127309IncompleteBC127713lin-28 homolog B (C. elegans)
40127313IncompleteBC141960lin-28 homolog B (C. elegans)
40127314IncompleteBC150537lin-28 homolog B (C. elegans)
40127315IncompleteBC150538lin-28 homolog B (C. elegans)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001004317  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001004317 NP_001004317 Q6ZN17 zf-CCHC
CSD

Related Sequences

 
mRNAGenPeptSwissProt
BC127712 AAI27713 Q6ZN17
BC127713 AAI27714 Q6ZN17
BC137526 AAI37527 Q6ZN17
BC137527 AAI37528 Q6ZN17
BC141960 AAI41961 Q6ZN17
BC150537 AAI50538 A7E2T3
BC150538 AAI50539 A7E2T3
DQ127228 AAZ38897 Q6ZN17
AK131411 BAD18558 Q6ZN17

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LIN28B NP_001004317 M.musculus Lin28b 380669 Gene Info NP_001026942 87
R.norvegicus Lin28b 689054   XP_001069344 86
D.melanogaster lin-28 38639   NP_647983 49
A.gambiae AgaP_AGAP006591 1277174   XP_316618 48
C.elegans lin-28 172626   NP_492281 43

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)