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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SMARCC2, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
Sequence ID:NM_001130420
NM_003075
NM_139067
Entrez Gene ID:6601
Ensembl ID:ENSG00000139613

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 56556766 - 56583351

 Exon Info From UCSC:
NM_001130420
NM_003075
NM_139067

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4180388Full LengthBC013045SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
4395012Full LengthBC026222SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
3854442IncompleteBC009067SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003066  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001130420 NP_001123892    
NM_003075 NP_003066 Q8TAQ2 Myb_DNA-binding
SWIRM
NM_139067 NP_620706    

Related Sequences

 
mRNAGenPeptSwissProt
U66616 AAC50694 Q8TAQ2
BC009067 AAH09067 Q8TAQ2
BC013045 AAH13045 Q8TAQ2
BC026222 AAH26222 Q8TAQ2
BT009924 AAP88926 Q8TAQ2
EU176256 ABW03707  
AB209006 BAD92243 Q59GV3
AB209293 BAD92530 Q59G16
AK293896 BAG57283 B4DF22
AL833124 CAH56218 Q658P9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SMARCC2 NP_001123892 M.musculus Smarcc2 68094 Gene Info NP_001107568 97
R.norvegicus LOC685179 685179   XP_002729813 96
A.gambiae AgaP_AGAP003118 1273789   XP_562883 53
D.melanogaster mor 41942   NP_001189230 50
C.elegans psa-1 180324   NP_507906 44
S.cerevisiae SWI3 853264   NP_012359 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta