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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLCO4A1, solute carrier organic anion transporter family, member 4A1
Sequence ID:NM_016354
Entrez Gene ID:28231
Ensembl ID:ENSG00000101187

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:20q13.33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 61287715 - 61303645

 Exon Info From UCSC:
NM_016354

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4908245Full LengthBC015727solute carrier organic anion transporter family, member 4A1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057438  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016354 NP_057438 Q96BD0 OATP
Kazal_2

Related Sequences

 
mRNAGenPeptSwissProt
AF104334 AAF15545 Q96BD0
AF205072 AAG42204 Q96BD0
AF187817 AAG43447 Q96BD0
BC015727 AAH15727 Q96BD0
DQ892857 ABM83783  
DQ896104 ABM87103  
AB031051 BAA89288 Q96BD0
AK000551 BAA91247 Q96BD0
AK023410 BAB14566 Q96BD0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLCO4A1 NP_057438 M.musculus Slco4a1 108115 Gene Info NP_683735 77
R.norvegicus Slco4a1 171144   NP_598292 76
A.gambiae AgaP_AGAP008712 1275562   XP_314819 51
D.melanogaster Oatp26F 33927   NP_609055 46
C.elegans Y70G10A.3 190573   NP_499267 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)