Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. VPS11, vacuolar protein sorting 11 homolog (S. cerevisiae)
Sequence ID:NM_021729
RefSeqGene ID:NG_029670
Entrez Gene ID:55823

Database Links

UniGeneEntrez GeneOMIMHPRDDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11q23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 118938492 - 118962717

 Exon Info From UCSC:
NM_021729

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6144541Full LengthBC065563vacuolar protein sorting 11 homolog (S. cerevisiae)
4640302IncompleteBC012051vacuolar protein sorting 11 homolog (S. cerevisiae)

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_021729 NP_068375    

Related Sequences

 
mRNAGenPeptSwissProt
AF258558 AAG23761 Q9H270
AF308800 AAG34677 Q9H270
BC012051 AAH12051 Q9H270
BC065563 AAH65563 Q9H270
AB027508 BAA95163 Q9H270
AK026012 BAB15320 Q9H270
AK223158 BAD96878 Q53FX3
AK056701 BAG51790 B3KPS8
AK302973 BAH13865 B7Z879
AL834218 CAH56401 Q658K0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens VPS11 NP_068375 M.musculus Vps11 71732 Gene Info NP_082165 98
R.norvegicus Vps11 315600   NP_001101608 98
A.thaliana VPS11 815065   NP_027676 45
A.gambiae AgaP_AGAP002665 1273295   XP_312259 42
N.crassa NCU05422 3879393   XP_963245 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)