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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. COL6A3, collagen, type VI, alpha 3
Sequence ID:NM_004369
NM_057164
NM_057165
NM_057166
NM_057167
RefSeqGene ID:NG_008676
Entrez Gene ID:1293
Ensembl ID:ENSG00000163359

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
BETHLEM MYOPATHYCOL6A1
COL6A2
ULLRICH CONGENITAL MUSCULAR DYSTROPHYCOL6A1
COL6A2

Cytogenetic Location (from UniGene)

Cytogenetic Location:2q37Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 238232660 - 238277681

 Exon Info From UCSC:
NM_004369
NM_057164
NM_057165
NM_057166
NM_057167

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9053125Full LengthBC144595collagen, type VI, alpha 3
9054444Full LengthBC171790collagen, type VI, alpha 3
9056995Full LengthBC150625collagen, type VI, alpha 3
100068845Full LengthBC172233collagen, type VI, alpha 3
4560529IncompleteBC033174collagen, type VI, alpha 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_476506  NP_476508  NP_476505  NP_004360  NP_476507  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004369 NP_004360 P12111 Kunitz_BPTI
VWA
Collagen
NM_057164 NP_476505   Kunitz_BPTI
VWA
Collagen
NM_057165 NP_476506   Kunitz_BPTI
VWA
Collagen
NM_057166 NP_476507   Kunitz_BPTI
VWA
Collagen
NM_057167 NP_476508   Kunitz_BPTI
VWA
Collagen

Related Sequences

 
mRNAGenPeptSwissProt
M27449 AAA52057 P12111
S49432 AAB24261 P12111
BC033174 AAH33174 Q8N4Z1
BC144595 AAI44596 B7ZMJ7
BC150625 AAI50626 B7ZMJ7
BC171790 AAI71790 B7ZW00
BC172233 AAI72233 P12111
AB209636 BAD92873 Q59F25
AK092021 BAG52467 P12111
AK303290 BAG64366 B4E0A4
AK304870 BAG65607 B4E3U5
X06196 CAA29557 P12111
X52022 CAA36267 P12111
BX641155 CAE46068 Q6MZG6
BX647500 CAH56139 Q63HQ4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COL6A3 NP_004360 M.musculus Col6a3 12835 Gene Info XP_003085374 85
R.norvegicus Col6a3 367313   NP_001102478 84

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)