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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC30A6, Solute carrier family 30 (zinc transporter), member 6
Sequence ID:NM_001193513
NM_017964
NM_001193514
NM_001193515
Entrez Gene ID:55676
Ensembl ID:ENSG00000152683

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, placenta, pooled tissue, prostate, salivary gland, skin, spleen, stem cell, synovium, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2p22.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 32390957 - 32446813

 Exon Info From UCSC:
NM_001193513
NM_017964
NM_001193514
NM_001193515

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4801303Full LengthBC066903solute carrier family 30 (zinc transporter), member 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060434  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001193513 NP_001180442    
NM_001193514 NP_001180443    
NM_001193515 NP_001180444    
NM_017964 NP_060434 Q6NXT4 Cation_efflux

Related Sequences

 
mRNAGenPeptSwissProt
BC032525 AAH32525 Q6NXT4
BC066903 AAH66903 Q6NXT4
AF173387 AAQ13628 Q7Z4D6
EF560719 ABQ59029 Q6NXT4
EF560726 ABQ59036 Q6NXT4
GQ129225 ACT64359  
GQ129226 ACT64360  
GQ129379 ACT64513  
GQ129380 ACT64514  
AK055663 BAB70980 Q6NXT4
AK096672 BAG53349 B3KU87
AK127716 BAG54557 B3KU87
AK304225 BAH14137 B7Z901

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC30A6 NP_060434 R.norvegicus Slc30a6 298786   NP_001100178 93
M.musculus Slc30a6 210148 Gene Info NP_659047 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)