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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC47A1, solute carrier family 47, member 1
Sequence ID:NM_018242
Entrez Gene ID:55244
Ensembl ID:ENSG00000142494

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17p11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 19437166 - 19482346

 Exon Info From UCSC:
NM_018242

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3874616Full LengthBC010661solute carrier family 47, member 1
5188651Full LengthBC058882solute carrier family 47, member 1
5186314IncompleteBC050592solute carrier family 47, member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060712  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_018242 NP_060712 Q96FL8 MatE

Related Sequences

 
mRNAGenPeptSwissProt
BC010661 AAH10661 Q96FL8
BC050592 AAH50592 Q96FL8
BC058882 AAH58882 Q96FL8
AK001709 BAA91852 Q96FL8
AK222625 BAD96345 Q96FL8
AK293196 BAG56736 B4DDH5
AK298254 BAG60519 B4DPA7
AK301854 BAG63296 B4DX84
AK302620 BAG63865 B4DYV3
AK304647 BAG65424 B4E3B2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC47A1 NP_060712 R.norvegicus Slc47a1 360539   NP_001014140 79
M.musculus Slc47a1 67473 Gene Info NP_080459 78
A.thaliana AT5G52450 835321   NP_200058 36
A.thaliana AT2G34360 817999   NP_180983 34
A.thaliana AT1G73700 843705   NP_177511 34
S.cerevisiae ERC1 856427   NP_011897 29

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)