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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. FARSA, Phenylalanyl-tRNA synthetase, alpha subunit
Sequence ID:NM_004461
Entrez Gene ID:2193
Ensembl ID:ENSG00000179115

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, peripheral nervous system, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19p13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 13033292 - 13044510

 Exon Info From UCSC:
NM_004461

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2823551Full LengthBC006495phenylalanyl-tRNA synthetase, alpha subunit
5214476IncompleteBC043565phenylalanyl-tRNA synthetase, alpha subunit

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004452  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_004461 NP_004452 Q9Y285
Q6IBR2
EC 6.1.1.20 tRNA-synt_2d

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U07424 AAB61694 Q9Y285
Q6IBR2
EC 6.1.1.20
AF042347 AAD02221 Q9Y285
Q6IBR2
EC 6.1.1.20
BC006495 AAH06495 Q9Y285
Q6IBR2
EC 6.1.1.20
BC043565 AAH43565 Q9Y285
Q6IBR2
EC 6.1.1.20
BT007198 AAP35862 Q9Y285
Q6IBR2
EC 6.1.1.20
DQ890745 ABM81671    
DQ893915 ABM84841    
D84471 BAA95666 Q9Y285 EC 6.1.1.20
AK092093 BAG52481 Q6IBR2  
AK304587 BAG65375 B4E363  
CR456740 CAG33021 Q9Y285
Q6IBR2
EC 6.1.1.20

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens FARSA NP_004452 M.musculus Farsa 66590 Gene Info NP_079924 93
R.norvegicus Farsa 288917   NP_001019408 93
D.melanogaster CG2263 31740   NP_572448 63
C.elegans frs-1 172311   NP_491792 61
A.gambiae AgaP_AGAP002653 1273306   XP_312272 58
A.thaliana AT4G39280 830084   NP_195639 56
N.crassa NCU05095 3873228   XP_957081 55
S.pombe frs2 2543647   NP_594078 54
S.cerevisiae FRS2 850522   NP_116631 52

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)