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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. BCAS2, Breast carcinoma amplified sequence 2
Sequence ID:NM_005872
Entrez Gene ID:10286
Ensembl ID:ENSG00000116752

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, stem cell, stomach, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 115110184 - 115124260

NM_005872 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12706115110182115110876
707787115112612115112692
788838115113320115113370
8391000115118210115118371
10011071115119308115119378
10721164115123919115124011
11651310115124119115124264

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3930559Full LengthBC005285breast carcinoma amplified sequence 2
3930637Full LengthBC022880breast carcinoma amplified sequence 2
4073772Full LengthBC012623breast carcinoma amplified sequence 2
4688387IncompleteBC039238breast carcinoma amplified sequence 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005863  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005872 NP_005863 O75934 BCAS2

Related Sequences

 
mRNAGenPeptSwissProt
AF081788 AAC64059 O75934
BC005285 AAH05285 O75934
BC012623 AAH12623 O75934
BC022880 AAH22880 O75934
BT019390 AAV38197 O75934
DQ892529 ABM83455  
EU176700 ABW03501  
EU832684 ACE87016  
EU832613 ACE87704  
AB020623 BAA34863 O75934
AK222637 BAD96357 Q53HE3
AK313141 BAG35960 B2R7W3
AB451245 BAG70059 B2R7W3
AB451369 BAG70183 B2R7W3
CR542037 CAG46834 O75934

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens BCAS2 NP_005863 M.musculus Bcas2 68183 Gene Info NP_080878 100
R.norvegicus Bcas2 295334   NP_001099928 99
D.melanogaster CG4980 43348   NP_651596 60
A.gambiae AgaP_AGAP002305 1273664   XP_312666 59
C.elegans T12A2.7 188435   NP_498360 39
A.thaliana MOS4 821343   NP_566599 31

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)