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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. CHORDC1, cysteine and histidine-rich domain (CHORD) containing 1
Sequence ID:NM_001144073
NM_012124
Entrez Gene ID:26973
Ensembl ID:ENSG00000110172

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11q14.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 89934616 - 89956227

 Exon Info From UCSC:
NM_001144073
NM_012124

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6471725Full LengthBC072461cysteine and histidine-rich domain (CHORD)-containing 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_036256  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001144073 NP_001137545    
NM_012124 NP_036256 Q9UHD1 CHORD
CS

Related Sequences

 
mRNAGenPeptSwissProt
AF192466 AAF18437 Q9UHD1
AF217505 AAF67616 Q9NZ93
AF123249 AAG43237 Q9UHD1
BC017789 AAH17789 Q9UHD1
BC072461 AAH72461 Q9UHD1
HQ447579 ADQ32065  
AK290231 BAF82920 Q9UHD1
AK312663 BAG35545 Q9UHD1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CHORDC1 NP_036256 M.musculus Chordc1 66917 Gene Info NP_080120 96
R.norvegicus Chordc1 315447   NP_001101598 96
A.gambiae AgaP_AGAP003064 4577001   XP_562821 46
D.melanogaster CHORD 42874   NP_651226 46
A.gambiae AgaP_AGAP003061 1273739   XP_312747 46
A.thaliana PBS2 835244   NP_568762 39
C.elegans chp-1 172138   NP_491519 39
N.crassa NCU03087 3880320   XP_964180 37

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)