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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. XPR1, xenotropic and polytropic retrovirus receptor 1
Sequence ID:NM_001135669
NM_004736
Entrez Gene ID:9213
Ensembl ID:ENSG00000143324

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1q25.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 180857289 - 180859385

 Exon Info From UCSC:
NM_001135669
NM_004736

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5582839Full LengthBC041142xenotropic and polytropic retrovirus receptor

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004727  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001135669 NP_001129141    
NM_004736 NP_004727 Q9UBH6 SPX
EXS

Related Sequences

 
mRNAGenPeptSwissProt
AF099082 AAD08928 Q9UBH6
AF089744 AAD10196 Q9UBH6
AF115389 AAD17211 Q9UBH6
BC041142 AAH41142 Q9UBH6
AL133058 CAB61383 Q9UBH6
AL137583 CAB70825 Q9UBH6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens XPR1 NP_004727 R.norvegicus Xpr1 289424   NP_001099462 96
M.musculus Xpr1 19775 Gene Info NP_035403 95
A.gambiae AgaP_AGAP005557 1276240   XP_315560 57
D.melanogaster CG10483 38666   NP_648000 57
A.thaliana AT1G14040 837965   NP_172857 34
A.thaliana AT1G69480 843280   NP_177107 34
A.thaliana AT2G03240 814853   NP_178423 34
A.thaliana AT1G26730 839214   NP_173995 34
A.thaliana AT2G03250 814854   NP_178424 33
A.thaliana AT1G35350 840424   NP_174768 33
A.thaliana AT3G29060 822550   NP_189549 33
A.thaliana AT2G03260 814855   NP_178425 32
A.thaliana SHB1 828638   NP_194265 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)