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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ABCA13, ATP-binding cassette, sub-family A (ABC1), member 13
Sequence ID:NM_152701
RefSeqGene ID:NG_012385
Entrez Gene ID:154664
Ensembl ID:ENSG00000179869

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:7p12.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 48321009 - 48685196

 Exon Info From UCSC:
NM_152701

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6499473IncompleteBC062666ATP-binding cassette, sub-family A (ABC1), member 13

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_689914  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_152701 NP_689914 Q86UQ4 ABC_tran

Related Sequences

 
mRNAGenPeptSwissProt
AF501281 AAO59914 Q86UQ4
AY204751 AAP13576 Q86UQ4
AK091270 BAC03623 Q86UQ4
AK126220 BAC86492 Q86UQ4
AK128516 BAC87475 Q6ZR43
BX647560 CAI46091 Q5HYK4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ABCA13 NP_689914 M.musculus Abca13 268379 Gene Info NP_839990 66
R.norvegicus Abca13 289797   NP_001099490 66

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)