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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. CSDA, cold shock domain protein A
Sequence ID:NM_001145426
NM_003651
Entrez Gene ID:8531
Ensembl ID:ENSG00000060138

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12p13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 10853886 - 10875922

 Exon Info From UCSC:
NM_001145426
NM_003651

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3634981Full LengthBC008801cold shock domain protein A
3835480Full LengthBC009744cold shock domain protein A
4137643Full LengthBC015564cold shock domain protein A
4551107Full LengthBC021926cold shock domain protein A
4563632Full LengthBC015913cold shock domain protein A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003642  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001145426 NP_001138898    
NM_003651 NP_003642 P16989 CSD

Related Sequences

 
mRNAGenPeptSwissProt
M24069 AAA35749 P16989
BC008801 AAH08801 P16989
BC009744 AAH09744 Q96GD7
BC015564 AAH15564 P16989
BC015913 AAH15913 P16989
BC021926 AAH21926 P16989
DQ892686 ABM83612  
DQ895930 ABM86856  
AB209896 BAD93133 Q59EB5
AK314846 BAG37363 P16989
X72712 CAA51261 P16989
X95325 CAA64631 P16989

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CSDA NP_003642 M.musculus Csda 56449 Gene Info NP_620817 89
R.norvegicus Csda 83807   NP_114185 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)