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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC38A2, solute carrier family 38, member 2
Sequence ID:NM_018976
Entrez Gene ID:54407
Ensembl ID:ENSG00000134294

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q

Chromosomal Position (from UCSC)

Chromosomal Position:12: 46751971 - 46765076

 Exon Info From UCSC:
NM_018976

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3874551Full LengthBC040342solute carrier family 38, member 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_061849  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_018976 NP_061849 Q96QD8 Aa_trans

Related Sequences

 
mRNAGenPeptSwissProt
AF116620 AAF71044 Q9P1K8
AF298897 AAG24618 Q96QD8
BC029379 AAH29379 Q8NHT5
BC040342 AAH40342 Q96QD8
AF259799 AAK38510 Q96QD8
DQ891801 ABM82727  
DQ894985 ABM85911  
AK001700 BAA91846 Q96QD8
AB037803 BAA92620 Q96QD8
AK172784 BAD18765 Q96QD8
AK291644 BAF84333 A8K6H9
AK293858 BAG57253 B4DEZ2
AJ344099 CAC51434 Q96QD8
CR457267 CAG33548 Q96QD8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC38A2 NP_061849 M.musculus Slc38a2 67760 Gene Info NP_780330 89
R.norvegicus Slc38a2 29642   NP_851604 88

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)