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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LIN7B, lin-7 homolog B (C. elegans)
Sequence ID:NM_022165
Entrez Gene ID:64130
Ensembl ID:ENSG00000104863

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:19q13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 49617656 - 49621717

NM_022165 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1814961761749617697
822004961810549618223
2012724961851649618587
2734824961951949619728
4836464962111149621274
6477544962160849621715

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4830017Full LengthBC027618lin-7 homolog B (C. elegans)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_071448  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_022165 NP_071448 Q9HAP6 PDZ
L27

Related Sequences

 
mRNAGenPeptSwissProt
AF311862 AAG34117 Q9HAP6
BC027618 AAH27618 Q9HAP6
AY358744 AAQ89104 Q9HAP6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LIN7B NP_071448 R.norvegicus Lin7b 60377   NP_068526 99
M.musculus Lin7b 22342 Gene Info NP_035828 98

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)