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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TMEM53, Transmembrane protein 53
Sequence ID:NM_024587
Entrez Gene ID:79639
Ensembl ID:ENSG00000126106

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1p34.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 45119850 - 45140087

NM_024587 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1613954511950145120880
139615174512584545125966
151816144514000245140098

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5582377Full LengthBC064520transmembrane protein 53

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_078863  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_024587 NP_078863 Q6P2H8 DUF829

Related Sequences

 
mRNAGenPeptSwissProt
BC064520 AAH64520 Q6P2H8
HQ448053 ADQ32534  
AK026006 BAB15317 Q6P2H8
AK296548 BAG59172 Q6P2H8
CR457348 CAG33629 Q6P2H8
AL832539 CAI46125 Q6P2H8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TMEM53 NP_078863 M.musculus Tmem53 68777 Gene Info NP_081113 87
R.norvegicus Tmem53 313529   NP_001101434 87
A.gambiae AgaP_AGAP009586 1278951   XP_318608 38
D.melanogaster CG8245 35503   NP_610178 37
A.thaliana AT3G19970 821535   NP_566652 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)