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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. OPN5, opsin 5
Sequence ID:NM_181744
NR_033806
NM_001030051
Entrez Gene ID:221391
Ensembl ID:ENSG00000124818

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6p12.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 47759641 - 47763235

Transcript StartTranscript EndChromosomal Start Chromosomal End
11584774977447749931
1592784775425047754369
2794494775953747759707
4507844776296447763298
78510264777588947776130
102710844777940947779466
108534804779171847794113

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8991910Full LengthBC126194opsin 5
8991914Full LengthBC126198opsin 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_859528  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_181744 NP_859528 Q6U736 7tm_1

Related Sequences

 
mRNAGenPeptSwissProt
BC126194 AAI26195 Q6U736
BC126198 AAI26199 Q6U736
AY255615 AAO85127 Q6U736
AY288419 AAP72128 Q6U736
AY377391 AAR21109 Q6U736
HQ258199 ADR82953  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens OPN5 NP_859528 R.norvegicus Opn5 316259   NP_861437 96
M.musculus Opn5 353344 Gene Info NP_861418 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)