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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. PSPC1, paraspeckle component 1
Sequence ID:NM_001042414
NR_003272
NR_044998
RefSeqGene ID:NG_029751
Entrez Gene ID:55269
Ensembl ID:ENSG00000121390

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:13q12.11Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:13: 20277314 - 20356897

NM_001042414 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
165052027701020277499
5066752027980120279970
6767332028368120283738
7348392030437820304483
8409242031570420315788
92511212032541020325606
112212172033346220333557
121815192034638120346682
152020772035652520357082

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4623069Full LengthBC014184paraspeckle component 1

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001042414 NP_001035879 Q8WXF1  

Related Sequences

 
mRNAGenPeptSwissProt
BC014184 AAH14184 Q8WXF1
AF448795 AAL59601 Q8WXF1
AF449627 AAL59602 Q8WXF1
DQ892679 ABM83605  
DQ895922 ABM86848  
AK001817 BAA91924 Q8WXF1
AK301554 BAG63050 B4DWI8
AL834505 CAD39162 Q8WXF1
CR457272 CAG33553 Q8WXF1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PSPC1 NP_001035879 R.norvegicus Pspc1 305910   NP_001020843 98
M.musculus Pspc1 66645 Gene Info NP_079958 98
C.elegans psf-1 175844   NP_498295 45

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)