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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. TRUB1, TruB pseudouridine (psi) synthase homolog 1 (E. coli)
Sequence ID:NM_139169
Entrez Gene ID:142940
Ensembl ID:ENSG00000165832

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:10q25.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:10: 116697995 - 116735184

NM_139169 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1347116697951116698297
348446116702403116702501
447502116710852116710907
503584116719484116719565
585657116730126116730198
658797116731893116732032
798854116734087116734143
8553411116734881116737437

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4822413Full LengthBC030601TruB pseudouridine (psi) synthase homolog 1 (E. coli)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_631908  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_139169 NP_631908 Q8WWH5 TruB_N

Related Sequences

 
mRNAGenPeptSwissProt
BC030601 AAH30601 Q8WWH5
AF448144 AAL40350 Q8WWH5
DQ890887 ABM81813  
DQ894043 ABM84969  
AK223567 BAD97287 Q8WWH5
AK312805 BAG35663 Q8WWH5
AK125554 BAG54213 B3KWQ1
AK302800 BAG64002 B4DZ90
BX648709 CAH10560 Q8WWH5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TRUB1 NP_631908 R.norvegicus Trub1 361775   NP_001012173 84
M.musculus Trub1 72133 Gene Info NP_082391 83

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)