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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TCTN1, tectonic family member 1
Sequence ID:NM_001082537
NM_001082538
NM_001173975
NM_001173976
NM_024549
RefSeqGene ID:NG_030381
Entrez Gene ID:79600
Ensembl ID:ENSG00000204852

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q24.11Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 111051933 - 111086931

 Exon Info From UCSC:
NM_001082537
NM_001082538
NM_001173975
NM_001173976
NM_024549

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5184202Full LengthBC062611tectonic family member 1
6054789Full LengthBC040113tectonic family member 1
4556434IncompleteBC030993tectonic family member 1
5273389IncompleteBC044885tectonic family member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_078825  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001040107 NP_001035196 Q96D96  
NM_001082537 NP_001076006 Q2MV58  
NM_001082538 NP_001076007    
NM_001173975 NP_001167446    
NM_001173976 NP_001167447    
NM_001256413 NP_001243342    
NM_024549 NP_078825   DUF1619
NM_032369 NP_115745   Ion_trans

Related Sequences

 
mRNAGenPeptSwissProt
BC007277 AAH07277 Q96D96
BC009731 AAH09731 Q96D96
BC030993 AAH30993 Q8NEI8
BC032672 AAH32672 Q96D96
BC033811 AAH33811 Q05BR9
BC040113 AAH40113 Q2MV58
BC062611 AAH62611 Q2MV58
AY358184 AAQ88551 Q2MV58
AY359054 AAQ89413 Q96D96
DQ278868 ABB90560 Q2MV58
GU211002 ADA61023 D2KFF9
JF432642 ADZ15859  
AK024780 BAB15000 Q2MV58
AK055891 BAB71036 Q2MV58
AK092775 BAC03973 Q2MV58
AK293543 BAG57024 B4DEB3
AK295514 BAG58431 B4DIB9
AK301732 BAH13543 A8MW34

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TCTN1 NP_001076007 M.musculus Tctn1 654470 Gene Info NP_001034242 72

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)