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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ZNHIT1, Zinc finger, HIT-type containing 1
Sequence ID:NM_006349
Entrez Gene ID:10467
Ensembl ID:ENSG00000106400

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7q22.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 100861409 - 100867471

NM_006349 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1514100860984100861497
515685100865884100866054
686765100866757100866836
766935100866953100867122
9361187100867217100867468

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4647446Full LengthBC017333zinc finger, HIT type 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006340  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006349 NP_006340 O43257 zf-HIT

Related Sequences

 
mRNAGenPeptSwissProt
U61837 AAB88578 O43257
AF093571 AAF03558 O43257
BC017333 AAH17333 O43257
DQ892275 ABM83201  
DQ895476 ABM86402  
AK312136 BAG35072 B2R5C5
CR456992 CAG33273 O43257

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ZNHIT1 NP_006340 M.musculus Znhit1 70103 Gene Info NP_081594 99
R.norvegicus LOC100360077 100360077   XP_002728003 99
D.melanogaster CG31917 326171   NP_608895 57
A.gambiae AgaP_AGAP007853 1278104   XP_317641 53
C.elegans CD4.7 183878   NP_001122894 46

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)