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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. COL6A5, collagen, type VI, alpha 5
Sequence ID:NM_153264
NR_022012
RefSeqGene ID:NG_021424
Entrez Gene ID:256076
Ensembl ID:ENSG00000172752

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3q22.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 130159467 - 130203688

 Exon Info From UCSC:
NM_153264

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_694996  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_153264 NP_694996   VWA

Related Sequences

 
mRNAGenPeptSwissProt
EU085556 ABW81241 A8TX70
AK093199 BAC04092 A8TX70
AK123718 BAC85681 A8TX70
AM906078 CAP19997 A8TX70
AM906079 CAP19998 A8TX70
AM906080 CAP19999 A8TX70
AM906081 CAP20000 A8TX70
AM906082 CAP20001 A8TX70
AM906083 CAP20002 A8TX70
AM906084 CAP20003 A8TX70

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COL6A5 NP_694996 M.musculus Col6a5 665033 Gene Info NP_001161395 75
R.norvegicus RGD1565804 501047   XP_576462 75

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)